Plague swept through groups of hunter-gatherers in southeastern Siberia 5,500 years ago, leaving dozens dead in its wake—with DNA from Yersinia pestis bacteria still trapped inside their teeth.

University of Oxford ancient DNA researcher Ruairidh Macleod and his colleagues recently sequenced the telltale bacterial DNA in teeth from plague victims at four ancient cemeteries in the area around Russia’s Lake Baikal. The tragedy that befell these communities is now the earliest known plague outbreak, courtesy of the oldest strain of Y. pestis ever sequenced.

Unearthing a new backstory for the plague

Until recently, scientists who study the evolution of diseases have held two fairly solid ideas about the origins of plague, the disease caused by Yersinia pestis bacteria. It's a scourge so awful that it has gone down in history as not just a plague but the plague. The first idea is that the earliest strains didn't have the right genetic traits to be really lethal. And the second is that the plague first began menacing humans when the first farmers settled in densely packed towns alongside rats and domestic animals.

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Very little is known about funerary practices in Iron Age Britain, since few human remains have survived. However, the environment in northwest Scotland is more conducive to preserving bone from that period. Archaeologists have previously noted evidence of postmortem manipulation of human remains, such as mummification, and of modifying human bones into tools or decorative artifacts. Now a new paper published in the journal Antiquity describes evidence of postmortem brain removal in remains from that region, as well as sharpened limb bones, possibly for use as tools.

The remains in question were found in 2000 at a burial cairn in Loch Borralie, near the most northwest tip of the Scottish mainland, after erosion revealed a human cranium. The excavated remains belonged to two individuals: one an adult female and the other a juvenile of (at the time) indeterminate sex; the cranium belonged to the latter. The authors of the new paper conducted a fresh osteoarchaeological analysis as well as multi-isotope and ancient DNA analysis. Radiocarbon dating of molar teeth from both sets of remains placed their deaths as occurring between 50 BCE and 70 CE.

In the case of the female individual, the authors noted an unusual break at the base of the cranium that likely occurred near the time of death. It's the kind of fracture that one gets from high-velocity impacts, including vehicular collisions, sporting accidents, falls, assaults, or even long-drop hanging. But the known forensic patterns observed in the aforementioned scenarios don't exactly match the pattern of the Iron Age cranium, leading the authors to conclude that it likely resulted from a targeted impact. They also noted perimortem fractures on both scapulae.

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