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Hunter-gatherers in Siberia died of a plague outbreak 5,500 years ago

Plague swept through groups of hunter-gatherers in southeastern Siberia 5,500 years ago, leaving dozens dead in its wake—with DNA from Yersinia pestis bacteria still trapped inside their teeth.

University of Oxford ancient DNA researcher Ruairidh Macleod and his colleagues recently sequenced the telltale bacterial DNA in teeth from plague victims at four ancient cemeteries in the area around Russia’s Lake Baikal. The tragedy that befell these communities is now the earliest known plague outbreak, courtesy of the oldest strain of Y. pestis ever sequenced.

Unearthing a new backstory for the plague

Until recently, scientists who study the evolution of diseases have held two fairly solid ideas about the origins of plague, the disease caused by Yersinia pestis bacteria. It's a scourge so awful that it has gone down in history as not just a plague but the plague. The first idea is that the earliest strains didn't have the right genetic traits to be really lethal. And the second is that the plague first began menacing humans when the first farmers settled in densely packed towns alongside rats and domestic animals.

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© Kevin WIlson

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Some ancient microbes frozen with Ötzi the Iceman are still growing

Ötzi the Iceman, Europe’s most famous mummy, is crawling with microbes, some long dead, some still eking out a living after thousands of years, and some very modern.

After he died in the Ötztal Alps, the Copper Age man now known as Ötzi lay alone and forgotten for 5,300 years, until a group of hikers stumbled on his freeze-dried remains in 1991. Since then, he’s received a lot of attention from scientists, who have sequenced his DNA, pored over his last meal and the remains of his gut microbes, and examined his clothes and his broken tools. Today, Ötzi lies in a high-tech resting place at the South Tyrol Museum of Archaeology in Italy, where, it turns out, his body is still home to a handful of cold-adapted yeast species that have probably been with him since just after he died.

Slightly morbid souvenirs from the Alps

Microbiologist Mohamed S. Sarhan (of the Institute of Mummy Studies at the private Eurac Research center) and his colleagues recently sampled material from Ötzi’s stomach and meltwater from inside his body, swabbed his skin, and even sampled airborne microbes from his frozen storage room and the lab outside it. They also took samples from a block of frozen alpine soil taken from next to Ötzi’s body back in 1991.

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© Sarhan et al. 2026

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